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How Your Startup’s R&D Expenses Can Earn You $250,000 in Tax Credit This Year

Updated: May 8

Each year the US government provides billions of dollars to innovative businesses for developing new or improving existing technologies, products, materials, and processes, under the US Research & Experimentation Tax Credit (R&D Tax Credit) program.

The R&D Tax Credit is a general business tax credit under Internal Revenue Code section 41 for companies that incur research and development (R&D) costs in the United States. The US R&D tax credit has been around since 1981.

Previously, the program would periodically expire and be renewed by Congress. Businesses wishing to include this in their long-term budgeting plans couldn’t count on the credit being around for certain. In 2015, the Congress made the R&D tax credit permanent as part of the Protecting Americans from Tax Hikes (PATH) Act of 2015 and also made key changes so that more businesses could benefit from the credit.

Historically, startups that were not paying federal income taxes could claim R&D Tax Credits, but would need to carry them forward on their corporate and/or shareholder returns until they could offset their income tax liabilities. This made it difficult for startups or businesses that weren’t profitable to benefit from the credits.

With the new changes, startups can apply the R&D tax credit against the employer portion of payroll tax up to $250,000 for each fiscal year. The new payroll tax offset allows qualified small businesses to receive a benefit for their research activities regardless of profitability.

What is a qualified small business?

  1. A business that has gross receipts of $5 million or less for the tax year.

  2. Has gross receipts for five years or less. The business must not have gross receipts for any tax year before the 5-tax-year period ending with the tax year they’re applying for. For example, businesses that have generated gross receipts prior to 2012 are not eligible to claim for the 2016 tax year.However, businesses that existed prior to 2012 but didn’t receive gross receipts could still qualify. Although the law is intended to benefit small businesses, larger businesses could also benefit from the rules as they’re written. For example, a significant percentage of life science companies have zero gross receipts for long periods of time until their drug receives U.S. Food and Drug Administration approval.

  3. Is not a tax-exempt organization under section 501.

What work qualifies for the R&D tax credit?

Qualified research is work intended to achieve an innovation within a scientific or technological field. The R&D efforts must pass a 4-part test in order to be eligible:

  1. New or improved business component: the work must be done to develop a new or improved product or process.

  2. Technological uncertainty: the work must be done in order to resolve technological uncertainty. A technological uncertainty exists if publically available information and knowledge cannot be applied to achieve the desired result.

  3. Systematic process: the work must be done in a systematic process to evaluate one or more alternatives to achieve the desired result.

  4. Technological in nature: the work must be within the physical or biological sciences, engineering or computer science.

How do I use the R&D tax credits to offset my startup’s payroll taxes?

The payroll tax credit election is an annual election made by a qualified small business specifying the amount of research credit, not to exceed $250,000, that may be used against the employer portion of social security liability. It is available for qualified expenses incurred in the 2016 tax year and after. If a business receives more than $250,000 in R&D tax credits, the remainder can be carried forward to offset payroll taxes or reduce taxes owed in future years.

Companies are required to pay Social Security tax of 6.2% on up to $118,500 of each employee’s salary. This means a company that employs 40 employees with an average annual salary of $100,000 per person would pay approximately $248,000 in Social Security payroll taxes in 2016.

You can first claim the qualified small business payroll tax credit for increasing research activities on the Form 941 for the quarter that begins after you file your income tax return. Form 941 is a quarterly statement used to report any withheld taxes from an employee’s paychecks and/or to report payment of the employer’s portion of Social Security or Medicare tax.

For example, if you file your 2016 income tax return based on a calendar year (January 1 – December 31) on March 15, 2017, the 2017 second quarter (April 1, 2017– June 30, 2017) Form 941, which is filed by July 31, 2017, is the first quarter that you can take advantage of the credits.

What are the deadlines to claim?

The R&D tax credits must be specified, elected, and filed on the original 2016 tax return before you can begin to offset payroll taxes in 2017.

For S Corps with a December fiscal year end, the deadline to claim for 2016 is March 15, 2017.  For S Corps with fiscal year ends other than December, the deadline to claim is the 15th day of the 3rd month following the end of the tax year.

For C Corps with a December fiscal year end, the deadline to claim for 2016 is April 15, 2017.  For C Corps with fiscal year ends other than December, the deadline to claim is 3.5 months following the end of the tax year.

How much of my startup’s R&D costs can I recover?

Let’s look at California as an example.

Federal portion – 6% of eligible expenditures or 14% of half of the average R&D expenditures over the past three years – this may yield a much higher credit (if expenditures remain constant over a three year period it results in a 10% credit)

State portion – 15% of eligible expenditures, calculated as 15% of half of the average R&D expenditures over the past three years

Startups could potentially use the credits towards payroll taxes for up to five years, with a maximum of $1.25 million in total credits claimed on their quarterly payroll tax returns.

For example, a startup with $500,000 of eligible software engineering expenses, could credit $50,000 or more, while a company with over $2.5 million in eligible expenses in 2016 could have a credit subject to the full $250,000 annual limitation. If the credit amount exceeds a company’s social security tax (OASDI tax) liability in any given quarter, the excess will be carried forward to the next calendar quarter.

While the payroll tax offset may be available to new businesses and startup companies for up to five years, any unused R&D credits that are not elected to offset payroll taxes may be carried forward for up to 20 years and used when the business becomes profitable.

Does my startup qualify for R&D tax credits?

Here are a few questions that you can use to determine whether the work you’re doing qualifies:

  1. Are you involved in engineering, design, data collection, testing or other developmental work?

  2. Have you designed or developed new software?

  3. Have you changed a process to reduce costs?

  4. Have you created a new product, made improvements or added new features to an existing product, or built a prototype?

  5. Have you incurred costs related to a process, project or prototype that is incomplete because of unresolved technical problems?

If you’ve never claimed the R&D tax credit previously either because you didn’t think you qualified or you couldn’t use the credits, it’s a great time to reconsider. Here’s a simple infographic that explains everything you need to know about the R&D tax credit program.

If you have any further questions, contact for a complimentary no-obligation assessment. Boast will go through your project(s) in more detail, tell you what qualifies and what doesn’t, and provide an estimate of your potential returns.

This is a guest blog post from Lloyed Lobo, Cofounder & CSO of Boast Capital.

Since 2011, Boast has been helping innovative businesses in the US and Canada recover their R&D costs from the government. Boast’s AI-driven software and experts—engineers and accountants with over 20 years experience—handle your R&D claims on an ongoing basis to ensure nothing is missed, all the supporting documentation is in place in the event of an audit, and your claims are compliant and maximized. For more information, visit


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